species:   Artha
pid:       MI0019210
parent:    ath-MIR5638a
paralog:   
locus:     3:15336705-15337170
matures:   ['AUACCAAAACUCUCUCACUUU', 'AGUGAAAGAUUUUUGGUACGU']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 3:15336705-15337170

0 out of bounds
3 alignments
3 proper strand
2 stranded perfect matches

               ***********************                                                                                                                                                                                                                                                                                                                                                                                                         ***********************            
UCUUUGGAUGCGAGAAUGUGUUUGGGGACAAUUGGAGCAAAUUGACUCCCUUACGGUUAGUAUGAAGGUUUGAAAGUGAAAGAUUUUUGGUACGUUUCUAGAAAGUAAAUAAAUGAAUCCAAGUUUCAAGCACAUUGUCUUUACACUAGUGUGGCAGGCUGGCAGCCUACCAGAUAACCAUUUUGAUUGUUCAUAAAGUGUUACCUUCAUAUUUUGCAAAACCUCUUAUCCAAUUGCGAGUGCAAAGUAGAGUUGGAACAUUCCAUUUAACAAUCAUAAUGGUCAUCUGGUGGGCUCUAGAAUUCAUCAUUAUGCACACCAAAGUAAAGAUUGUGUGCUCGAAACUUGGAUUCAAUUACUUUUUCGUCAAAACAUACCAAAACUCUCUCACUUUUAAAAGUUCAAGUUAACGGAAGUAAGGGGAUCGAUCUGUUCCAAUUGUACUCAAACACACUCUCUCAUCCAA
...(((((((.((((.((((((((((.((((((((((((.(((((.((((((((.(((((..((((..(((((((((((.(((.((((((((.(((((.(((((((((.....((((((((((((((.(((((((.((((((((....(((((.((..((((.((((((((((((.((((((.((((((((.....((((((.((..(.(((((((((....(((.((......)).))))))))))))..)..))))))))......)))))))).)))))).))))))))))))))))............)))))))....)))))))).))))))).)))))))))))))).))))))))).)...)))).)))))))).))).)))))))))))..))))..)))))....)))))))).))))).)))))))))))).)))))))))).)))).)))))))
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUACCAAAACUCUCUCACUUU------------------------------------------------------------------------ l=21 a=0 c
--------------------------------------------------------------------------AGUGAAAGAUUUUUGGUACGU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------GUGUUUGGGGACAAUUGGAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 ma
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCCAAUUGUACUCAAACACAC------------ l=21 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUCAAAACAUACCAAAACUCUCUu----------------------------------------------------------------------------- l=24 a=1 
-----------------GUGUUUGGGGACAAUUGGAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=2 (ma)

mb-01111
ax-1010011
ku-01
ss-111101111110
fn-011
